PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G241700.1
Common NameB456_002G241700, LOC105787360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 203aa    MW: 22127.8 Da    PI: 4.9584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G241700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44e-144492255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +kGVr   ++g+Wv+e+r+p   +k+ r++lg+f  + +Aaka++ a+++l+g
  Gorai.002G241700.1 44 IFKGVRT--RKGKWVSEVREP---NKKSRIWLGTFSCPGMAAKAYDVAALALRG 92
                        59***74..46******9998...347*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-94392IPR001471AP2/ERF domain
CDDcd000183.38E-2643102No hitNo description
PROSITE profilePS5103218.28144100IPR001471AP2/ERF domain
SMARTSM003801.9E-2644106IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1644102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2544102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVQSSKSHEI SSSSSQSEAG STSLGQSQKR KAGRKKFKET RHPIFKGVRT RKGKWVSEVR  60
EPNKKSRIWL GTFSCPGMAA KAYDVAALAL RGDAASLNFP ESAHTLPHPK SLSVKDIQIA  120
AMEAAATLID DKTLPDSVSS AVPAFPENMV FEDEDEVFNM PGILESMAEG LMITPPSMQK  180
GYYPDDDDDD GNDYVEVNLW DD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157362e-46JX615736.1 Gossypium hirsutum clone NBRI_GE59889 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469168.11e-149PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotP938358e-49DRE1B_ARATH; Dehydration-responsive element-binding protein 1B
TrEMBLA0A0D2Q3G91e-149A0A0D2Q3G9_G
STRINGVIT_08s0007g03790.t011e-60(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.14e-40C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]